1J1F

Crystal structure of the RNase MC1 mutant N71T in complex with 5'-GMP

Structural Biology Knowledgebase: 1J1F SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.244
  • R-Value Work: 0.221

Literature

Macromolecules
Sequence Display for 1J1F

Classification: Hydrolase

Total Structure Weight: 21707.49

Macromolecule Entities
Molecule Chains Length Organism Details
RIBONUCLEASE MC1 A 191 Momordica charantia EC#: 3.1.27.1 IUBMB
Mutation: G40Q, ΔQ50, N71T, Q164E
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
5GP
Query on 5GP

A GUANOSINE-5'-MONOPHOSPHATE
C10 H14 N5 O8 P
RQFCJASXJCIDSX-UUOKFMHZSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.244
  • R-Value Work: 0.221
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 38.38 α = 90.00
b = 65.78 β = 90.00
c = 75.88 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-12-03
  • Released Date: 2003-05-20
  • Deposition author(s): Numata, T., Suzuki, A., Kakuta, Y., Kimura, K., Yao, M., Tanaka, I., Yoshida, Y., Ueda, T., Kimura, M.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4