1J0P

Three dimensional Structure of the Y43L mutant of Tetraheme Cytochrome c3 from Desulfovibrio vulgaris Miyazaki F

Structural Biology Knowledgebase: 1J0P SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 0.91 Å
  • R-Value Free: 0.136
  • R-Value Work: 0.099

Literature

Macromolecules
Sequence Display for 1J0P

Classification: Electron transport

Total Structure Weight: 15020.69

Macromolecule Entities
Molecule Chains Length Organism Details
Cytochrome c3 A 108 Desulfovibrio vulgaris Mutation: Y43L
Gene Name(s): DvMF_2499
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HEM
Query on HEM

A PROTOPORPHYRIN IX CONTAINING FE
HEME (Synonym)
C34 H32 Fe N4 O4
KABFMIBPWCXCRK-RGGAHWMASA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EOH
Query on EOH

A ETHANOL
C2 H6 O
LFQSCWFLJHTTHZ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 0.91 Å
  • R-Value Free: 0.136
  • R-Value Work: 0.099
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 51.87 α = 90.00
b = 67.31 β = 90.00
c = 34.33 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-11-19
  • Released Date: 2003-11-19
  • Deposition author(s): Ozawa, K., Yasukawa, F., Kumagai, J., Ohmura, T., Cusanvich, M.A., Tomimoto, Y., Ogata, H., Higuchi, Y., Akutsu, H.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4