1J0N

Crystal Structure of Bacillus sp. GL1 Xanthan Lyase that Acts on Side Chains of Xanthan


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.241
  • R-Value Work: 0.169

Literature

Macromolecules
Sequence Display for 1J0N

Classification: LYASE

Total Structure Weight: 81034.62

Macromolecule Entities
Molecule Chains Length Organism Details
XANTHAN LYASE A 752 Bacillus sp. gl1 EC#: 4.2.2.12 IUBMB
Mutation: I161T
Gene Name(s): xly
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CEG
Query on CEG

A 4,6-O-(1-CARBOXYETHYLIDENE)-BETA-D-GLUCOSE
C9 H14 O8
QVVFNJUJKXWFAU-GLPGPYIRSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.241
  • R-Value Work: 0.169
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 54.36 α = 90.00
b = 91.31 β = 90.00
c = 159.26 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-11-19
  • Released Date: 2003-04-01
  • Deposition author(s): Hashimoto, W., Nankai, H., Mikami, B., Murata, K.

Revision History

  • Version 1_0: 2003-04-01

    Type: Initial release

  • Version 1_1: 2008-04-27

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Source and taxonomy, Version format compliance

  • Version 1_3: 2017-10-04

    Type: Refinement description