1J05

The crystal structure of anti-carcinoembryonic antigen monoclonal antibody T84.66 Fv fragment

Structural Biology Knowledgebase: 1J05 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.217
  • R-Value Work: 0.185

Literature

Macromolecules
Sequence Display for 1J05

Classification: Immune system

Total Structure Weight: 51068.89

Macromolecule Entities
Molecule Chains Length Organism Details
anti-CEA mAb T84.66, light chain A, L 111 Mus musculus Fragment: Fv fragment
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
anti-CEA mAb T84.66, heavy chain B, H 121 Mus musculus Fragment: Fv fragment
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PO4
Query on PO4

B, H PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A, L GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.217
  • R-Value Work: 0.185
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 61.77 α = 90.00
b = 75.03 β = 94.82
c = 63.10 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-11-01
  • Released Date: 2003-12-16
  • Deposition author(s): Kondo, H., Nishimura, Y., Shiroishi, M., Asano, R., Noro, N., Tsumoto, K., Kumagai, I.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update