1IZ8

Re-refinement of the structure of hydrolytic haloalkane dehalogenase linb from sphingomonas paucimobilis UT26 with 1,3-propanediol, a product of debromidation of dibrompropane, at 2.0A resolution

Structural Biology Knowledgebase: 1IZ8 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.248
  • R-Value Work: 0.166

Literature

Macromolecules
Sequence Display for 1IZ8

Classification: HYDROLASE

Total Structure Weight: 33289.91

Macromolecule Entities
Molecule Chains Length Organism Details
HALOALKANE DEHALOGENASE, LINB A 295 Sphingomonas paucimobilis EC#: 3.8.1.5 IUBMB
Gene Name(s): linB
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
BR
Query on BR

A BROMIDE ION
Br
CPELXLSAUQHCOX-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PDO
Query on PDO

A 1,3-PROPANDIOL
C3 H8 O2
YPFDHNVEDLHUCE-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.248
  • R-Value Work: 0.166
  • Space Group: P 21 21 2

Unit Cell:

Length (Å) Angle (°)
a = 50.23 α = 90.00
b = 71.72 β = 90.00
c = 73.32 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-09-30
  • Released Date: 2002-10-16
  • Deposition author(s): Streltsov, V.A.

Revision History

  • 2011-08-10
    Type: Other | Details: remove REMARK 0
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4