1IYL

Crystal Structure of Candida albicans N-myristoyltransferase with Non-peptidic Inhibitor

Structural Biology Knowledgebase: 1IYL SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.2 Å
  • R-Value Free: 0.366
  • R-Value Work: 0.284

Literature

Macromolecules
Sequence Display for 1IYL

Classification: TRANSFERASE

Total Structure Weight: 182901.88

Macromolecule Entities
Molecule Chains Length Organism Details
Myristoyl-CoA:Protein N-Myristoyltransferase A, B, C, D 392 Candida albicans EC#: 2.3.1.97 IUBMB
Gene Name(s): NMT1 Gene View CaO19.12111 CaO19.4641
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
R64
Query on R64

A, B, C (1-METHYL-1H-IMIDAZOL-2-YL)-(3-METHYL-4-{3- [(PYRIDIN-3-YLMETHYL)-AMINO]-PROPOXY}-BENZOFURAN- 2-YL)-METHANONE
C23 H24 N4 O3
VZBQJKIOAOUYJL-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
R64 IC50: 1 nM (100) BindingDB

N/A in BindingMoad
IC50: 1 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.2 Å
  • R-Value Free: 0.366
  • R-Value Work: 0.284
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 93.28 α = 90.00
b = 96.89 β = 90.00
c = 269.28 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-08-29
  • Released Date: 2002-12-30
  • Deposition author(s): Sogabe, S., Fukami, T.A., Morikami, K., Shiratori, Y., Aoki, Y., D'Arcy, A., Winkler, F.K., Banner, D.W., Ohtsuka, T.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values