1ITU

HUMAN RENAL DIPEPTIDASE COMPLEXED WITH CILASTATIN

Structural Biology Knowledgebase: 1ITU SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.254
  • R-Value Work: 0.185

Literature

Macromolecules
Sequence Display for 1ITU

Classification: HYDROLASE

Total Structure Weight: 84080.38

Macromolecule Entities
Molecule Chains Length Organism Details
RENAL DIPEPTIDASE A, B 369 Homo sapiens EC#: 3.4.13.19 IUBMB
Gene Name(s): DPEP1 Gene View MDP RDP
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CIL
Query on CIL

A, B CILASTATIN
C16 H26 N2 O5 S
DHSUYTOATWAVLW-MSSAFCDDSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NAG
Query on NAG

A, B N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A, B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.254
  • R-Value Work: 0.185
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 80.18 α = 90.00
b = 79.49 β = 96.34
c = 56.95 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-02-03
  • Released Date: 2002-08-28
  • Deposition author(s): Nitanai, Y., Satow, Y., Adachi, H., Tsujimoto, M.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update