1IRE

Crystal Structure of Co-type nitrile hydratase from Pseudonocardia thermophila

Structural Biology Knowledgebase: 1IRE SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.191
  • R-Value Work: 0.178

Literature

Macromolecules
Sequence Display for 1IRE

Classification: LYASE

Total Structure Weight: 49449.05

Macromolecule Entities
Molecule Chains Length Organism Details
Nitrile Hydratase A 204 Pseudonocardia thermophila EC#: 4.2.1.84 IUBMB
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Nitrile Hydratase B 228 Pseudonocardia thermophila EC#: 4.2.1.84 IUBMB
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CO
Query on CO

A COBALT (II) ION
Co
XLJKHNWPARRRJB-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 2 Unique
ID Chains Type Formula 2D Diagram Parent
CSD
Query on CSD
A L-PEPTIDE LINKING C3 H7 N O4 S CYS
CSO
Query on CSO
A L-PEPTIDE LINKING C3 H7 N O3 S CYS

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.191
  • R-Value Work: 0.178
  • Space Group: P 32 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 65.50 α = 90.00
b = 65.50 β = 90.00
c = 184.61 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-10-01
  • Released Date: 2002-10-01
  • Deposition author(s): Miyanaga, A., Fushinobu, S., Ito, K., Wakagi, T.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values