1IQU

Crystal structure of photolyase-thymine complex

Structural Biology Knowledgebase: 1IQU SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.243
  • R-Value Work: 0.211

Literature

Macromolecules
Sequence Display for 1IQU

Classification: LYASE

Total Structure Weight: 48981.11

Macromolecule Entities
Molecule Chains Length Organism Details
photolyase A 420 Thermus thermophilus EC#: 4.1.99.3 IUBMB
Gene Name(s): phr TTHB102
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FAD
Query on FAD

A FLAVIN-ADENINE DINUCLEOTIDE
C27 H33 N9 O15 P2
VWWQXMAJTJZDQX-UYBVJOGSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
TDR
Query on TDR

A THYMINE
C5 H6 N2 O2
RWQNBRDOKXIBIV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PO4
Query on PO4

A PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.243
  • R-Value Work: 0.211
  • Space Group: P 61 2 2

Unit Cell:

Length (Å) Angle (°)
a = 113.10 α = 90.00
b = 113.10 β = 90.00
c = 142.55 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-08-03
  • Released Date: 2002-05-08
  • Deposition author(s): Komori, H., Masui, R., Kuramitsu, S., Yokoyama, S., Shibata, T., Inoue, Y., Miki, K.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4