1IJ8

CRYSTAL STRUCTURE OF LITE AVIDIN-BNI COMPLEX

Structural Biology Knowledgebase: 1IJ8 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.234
  • R-Value Work: 0.204

Literature

Macromolecules
Sequence Display for 1IJ8

Classification: UNKNOWN FUNCTION

Total Structure Weight: 29871.66

Macromolecule Entities
Molecule Chains Length Organism Details
AVIDIN A, B 128 Gallus gallus Mutation: I34T
Gene Name(s): AVD
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
BNI
Query on BNI

A, B 5-(2-OXO-HEXAHYDRO-THIENO[3,4-D]IMIDAZOL- 6-YL)-PENTANOIC ACID (4-NITRO-PHENYL)-AMIDE
BIOTINYL P-NITROANILINE (Synonym)
C16 H20 N4 O4 S
PORZMUYPQKOFQY-YDHLFZDLSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NDG
Query on NDG

A, B 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
C8 H15 N O6
OVRNDRQMDRJTHS-PVFLNQBWSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.234
  • R-Value Work: 0.204
  • Space Group: P 21 21 2

Unit Cell:

Length (Å) Angle (°)
a = 72.27 α = 90.00
b = 80.36 β = 90.00
c = 43.40 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-04-25
  • Released Date: 2001-09-12
  • Deposition author(s): Livnah, O., Huberman, T.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values