1IHY

GAPDH complexed with ADP-ribose

Structural Biology Knowledgebase: 1IHY SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.207
  • R-Value Work: 0.176

Literature

Macromolecules
Sequence Display for 1IHY

Classification: OXIDOREDUCTASE

Total Structure Weight: 146427.34

Macromolecule Entities
Molecule Chains Length Organism Details
GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A, B, C, D 333 Panulirus versicolor EC#: 1.2.1.12 IUBMB
Mutation: A18T, A59V, A261T
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
APR
Query on APR

A, B, C, D ADENOSINE-5-DIPHOSPHORIBOSE
C15 H23 N5 O14 P2
SRNWOUGRCWSEMX-KEOHHSTQSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A, B, C, D SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
APR N/A in BindingDB
N/A in BindingMoad
Ki: 180000 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.207
  • R-Value Work: 0.176
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 152.80 α = 90.00
b = 100.35 β = 110.28
c = 128.31 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-04-20
  • Released Date: 2002-07-31
  • Deposition author(s): Shen, Y.-Q., Song, S.-Y., Lin, Z.-J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4