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Structure of the Hybrid RNA/DNA R-GCUUCGGC-D[BR]U in Presence of RH(NH3)6+++
DOI:10.2210/pdb1iha/pdb   NDB ID: AH0018
1IHA
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: DNA/RNA
    Structure Weight: 6256.32
    Molecule: 5'-R(*GP*CP*UP*UP*CP*GP*GP*C)-D(P*(BRU))-3'
    Polymer: 1 Type: hybrid Length: 9
    Chains: A, B
     
  •   Structure Validation Hide

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  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    165D  previous refinement using xplor at medium resolution 
    1ICG  a fluoro-uracil replaces the bromo-uracil and iridium hexammine replaces the rhodium hexammine 
    1ID9  a fluoro-uracil replaces the bromo-uracil 
    1IDW  a chloro-uracil replaces the bromo-uracil 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    CL
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    CL Cl
    CHLORIDE ION
    RHD
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    RHD H18 N6 Rh
    RHODIUM HEXAMINE ION
    RHD:1IHA
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    BRU
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    BRU C9 H12 Br N2 O8 P DU dnaLinking
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: AH0018
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors
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  •   Deposition Summary Hide
    Authors:   Cruse, W.B.,  Saludjian, P.,  Neuman, A.,  Prange, T.

    Deposition:   2001-04-19
    Release:   2001-05-07
    Last Modified (REVDAT):   2009-02-24
     
  •   Revision History    Hide
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    2011-07-13
    Version format compliance
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    Resolution[Å]:   1.60
    R-Value: 0.161 (obs.)
    R-Free: 0.196
    Space Group: C 2
    Unit Cell:
      Length [Å] Angles [°]
    a = 53.80 α = 90.00 
    b = 19.40 β = 109.90 
    c = 50.31 γ = 90.00