1IGY

STRUCTURE OF IMMUNOGLOBULIN

Structural Biology Knowledgebase: 1IGY SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.2 Å
  • R-Value Free: 0.327
  • R-Value Work: 0.211

Literature

Macromolecules
Sequence Display for 1IGY

Classification: IMMUNOGLOBULIN

Total Structure Weight: 146105.98

Macromolecule Entities
Molecule Chains Length Organism Details
IGG1 INTACT ANTIBODY MAB61.1.3 A, C 213 Mus musculus Mutation: Q7V, ΔP37
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
IGG1 INTACT ANTIBODY MAB61.1.3 B, D 434 Mus musculus Mutation: Q3K, Q6E, P9A, E12A, K13R, I20M, F27Y, S28T, L29F, P30T, G31T, H32Y, N33T, N35H, V38K, N41P, K43Q, S44G, N50Y, D52N, Y53S, Y54S, G55V, G56Y, F59Y, P61Q, K62R, G65D, V71R, K73R, S76N, L78A, Y79N, M80I, T82AS, Q83T, E85D, ΔA116, ΔR117, R93V, D95E, ΔN122, ΔY123, G97E, F98V, T101P, L108T, A113S, T199P, W200R, V263T, T265L, L268V, D296N, S321V, E324A, R363K, K365R, W408S, N410D, P415A, A416P, N427D, N430D
Gene Name(s): Ighg1 Igh-4
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 7 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

B, D N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NDG
Query on NDG

B, D 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
C8 H15 N O6
OVRNDRQMDRJTHS-PVFLNQBWSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BMA
Query on BMA

B, D BETA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-RWOPYEJCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GAL
Query on GAL

B, D BETA-D-GALACTOSE
C6 H12 O6
WQZGKKKJIJFFOK-FPRJBGLDSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MAN
Query on MAN

B, D ALPHA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-PQMKYFCFSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FUC
Query on FUC

D ALPHA-L-FUCOSE
C6 H12 O5
SHZGCJCMOBCMKK-SXUWKVJYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FUL
Query on FUL

B BETA-L-FUCOSE
6-DEOXY-BETA-L-GALACTOSE (Synonym)
C6 H12 O5
SHZGCJCMOBCMKK-KGJVWPDLSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.2 Å
  • R-Value Free: 0.327
  • R-Value Work: 0.211
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 66.65 α = 90.00
b = 190.66 β = 109.66
c = 73.10 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1997-10-09
  • Released Date: 1998-04-15
  • Deposition author(s): Harris, L.J., McPherson, A.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update