1ICF

CRYSTAL STRUCTURE OF MHC CLASS II ASSOCIATED P41 II FRAGMENT IN COMPLEX WITH CATHEPSIN L

Structural Biology Knowledgebase: 1ICF SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.213
  • R-Value Work: 0.182

Literature

Macromolecules
Sequence Display for 1ICF

Classification: HYDROLASE

Total Structure Weight: 62721.82

Macromolecule Entities
Molecule Chains Length Organism Details
PROTEIN (CATHEPSIN L: HEAVY CHAIN) A, C 175 Homo sapiens EC#: 3.4.22.15 IUBMB
Gene Name(s): CTSL Gene View CTSL1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
PROTEIN (CATHEPSIN L: LIGHT CHAIN) B, D 42 Homo sapiens EC#: 3.4.22.15 IUBMB
Gene Name(s): CTSL Gene View CTSL1
PROTEIN (INVARIANT CHAIN) I, J 65 Homo sapiens Fragment: THYROGLOBULIN TYPE-1 DOMAIN
Gene Name(s): CD74 Gene View DHLAG
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

I, J N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.213
  • R-Value Work: 0.182
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 62.59 α = 90.00
b = 80.59 β = 96.77
c = 64.25 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1999-01-07
  • Released Date: 2000-01-12
  • Deposition author(s): Guncar, G., Pungercic, G., Klemencic, I., Turk, V., Turk, D.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values