1I8M

CRYSTAL STRUCTURE OF A RECOMBINANT ANTI-SINGLE-STRANDED DNA ANTIBODY FRAGMENT COMPLEXED WITH DT5

Structural Biology Knowledgebase: 1I8M SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.258
  • R-Value Work: 0.220

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1I8M

Classification: IMMUNE SYSTEM / DNA

Total Structure Weight: 97674.51


Macromolecule Entities
Molecule Chains Length Organism Details
ANTIBODY LIGHT CHAIN FAB A, L 214 Mus musculus Gene Name(s):
ANTIBODY HEAVY CHAIN FAB B, H 224 Mus musculus Gene Name(s): Ighm Igh-6 Slc25a30 VH186.2-D-J-C mu
Macromolecule Entities
Molecule Chains Length Organism Details
5'-D(*TP*TP*TP*TP*T)-3' T 5 synthetic
5'-D(P*TP*T)-3' D 2 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.258
  • R-Value Work: 0.220
  • Space Group: P 65 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 171.84 α = 90.00
b = 171.84 β = 90.00
c = 144.57 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-03-14
  • Released Date: 2001-12-07
  • Deposition author(s): Tanner, J.J., Komissarov, A.A., Deutscher, S.L.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4