1I7I

CRYSTAL STRUCTURE OF THE LIGAND BINDING DOMAIN OF HUMAN PPAR-GAMMA IN COMPLEX WITH THE AGONIST AZ 242

Structural Biology Knowledgebase: 1I7I SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.35 Å
  • R-Value Free: 0.284
  • R-Value Work: 0.238

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1I7I

Classification: TRANSCRIPTION

Total Structure Weight: 67236.27

Macromolecule Entities
Molecule Chains Length Organism Details
PEROXISOME PROLIFERATOR ACTIVATED RECEPTOR GAMMA A, B 292 Homo sapiens Fragment: LIGAND BINDING DOMAIN
Gene Name(s): PPARG Gene View NR1C3

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
AZ2
Query on AZ2

A, B (2S)-2-ETHOXY-3-[4-(2-{4-[(METHYLSULFONYL)OXY]PHENYL}ETHOXY)PHENYL]PROPANOIC ACID
AZ 242 (Synonym)
C20 H24 O7 S
CXGTZJYQWSUFET-IBGZPJMESA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
AZ2 EC50: 13 - 3528 nM (98 - 100) BindingDB
IC50: 350 nM (100) BindingDB
Ki: 18 - 200 nM (98 - 100) BindingDB

N/A in BindingMoad
IC50: 200 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.35 Å
  • R-Value Free: 0.284
  • R-Value Work: 0.238
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 92.93 α = 90.00
b = 61.78 β = 101.52
c = 118.98 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-03-09
  • Released Date: 2002-03-09
  • Deposition author(s): Petersen, J.F.W., Cronet, P., Folmer, R., Blomberg, N., Sjoblom, K., Karlsson, U., Lindstedt, E.-L., Bamberg, K.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4