1I5R

TYPE 1 17-BETA HYDROXYSTEROID DEHYDROGENASE EM1745 COMPLEX

Structural Biology Knowledgebase: 1I5R SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.205
  • R-Value Work: 0.185

Literature

Macromolecules
Sequence Display for 1I5R

Classification: OXIDOREDUCTASE

Total Structure Weight: 35842.23

Macromolecule Entities
Molecule Chains Length Organism Details
TYPE 1 17 BETA-HYDROXYSTEROID DEHYDROGENASE A 327 Homo sapiens EC#: 1.1.1.62 IUBMB
Gene Name(s): HSD17B1 Gene View E17KSR EDH17B1 EDH17B2 EDHB17 SDR28C1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HYC
Query on HYC

A O5'-[9-(3,17B-DIHYDROXY-1,3,5(10)-ESTRATRIEN- 16B-YL)-NONANOYL]ADENOSINE
EM-1745 (Synonym)
C37 H51 N5 O7
CKSDYJASHNGOOS-KTXOUVACSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
HYC IC50: 8 - 52 nM (99) BindingDB
Ki: 3 nM (99) BindingDB

Ki: 3 nM  BindingMOAD
Ki: 3.0 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.205
  • R-Value Work: 0.185
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 119.27 α = 90.00
b = 42.71 β = 99.16
c = 58.73 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-02-28
  • Released Date: 2003-03-11
  • Deposition author(s): Qiu, W., Campbell, R.L., Boivin, P., Poirier, D., Lin, S.-X.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values