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CRYSTAL STRUCTURE OF AN SM-LIKE PROTEIN (AF-SM1) FROM ARCHAEOGLOBUS FULGIDUS COMPLEXED WITH SHORT POLY-U RNA
DOI:10.2210/pdb1i5l/pdb   NDB ID: PR0046
1I5L
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: RNA Binding Protein/rna
    Structure Weight: 120208.83
    Molecule: 5'-R(*UP*UP*U)-3'
    Polymer: 1 Type: rna Length: 3
    Chains: U, Y
    Molecule: PUTATIVE SNRNP SM-LIKE PROTEIN AF-SM1
    Polymer: 2 Type: protein Length: 77
    Chains: A, B, C, D, E, F, G, H, I, J, K, L, M, N
    Organism: Archaeoglobus fulgidus
    Gene Name: AF_0875
    UniProtKB: Protein Feature View | Search PDB | O29386  
     
  •   Structure Validation Hide

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  •   Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 2
    Scientific Name: Archaeoglobus fulgidus   Taxonomy   Expression System: Escherichia coli bl21(de3)  
     
  •   Related PDB Entries Hide
    Identifier Details
    1B34  Crystal Structure of the D1D2 Sub-complex from the Human Core snRNP Domain 
    1D3B  Crystal Structure of the D3B Subcomplex of the Human Core snRNP Domain at 2.0 A Resolution 
    1I4K  Crystal Structure of an Sm-like Protein (AF-Sm1) from Archaeoglobus fulgidus at 2.5 A Resolution 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    URI
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    URI C9 H12 N2 O6
    URIDINE
    URI:1I5L
     
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  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: PR0046
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly 1       
Biological assembly 1 assigned by authors
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  •   Deposition Summary Hide
    Authors:   Toro, I.,  Thore, S.,  Mayer, C.,  Basquin, J.,  Seraphin, B.,  Suck, D.

    Deposition:   2001-02-28
    Release:   2001-08-28
    Last Modified (REVDAT):   2009-02-24
     
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    2011-07-13
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  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   2.75
    R-Value: 0.229 (obs.)
    R-Free: 0.300
    Space Group: P 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 69.86 α = 90.00 
    b = 130.44 β = 115.36 
    c = 70.05 γ = 90.00