1I5L

CRYSTAL STRUCTURE OF AN SM-LIKE PROTEIN (AF-SM1) FROM ARCHAEOGLOBUS FULGIDUS COMPLEXED WITH SHORT POLY-U RNA

Structural Biology Knowledgebase: 1I5L SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.75 Å
  • R-Value Free: 0.300
  • R-Value Work: 0.225

Literature

Macromolecules
Sequence Display for 1I5L

Classification: RNA BINDING PROTEIN / RNA

Total Structure Weight: 120208.88


Macromolecule Entities
Molecule Chains Length Organism Details
PUTATIVE SNRNP SM-LIKE PROTEIN AF-SM1 A, B, C..., D, E, F, G, H, I, J, K, L, M, NA, B, C, D, E, F, G, H, I, J, K, L, M, N 77 Archaeoglobus fulgidus Gene Name(s): AF_0875
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
5'-R(*UP*UP*U)-3' U, Y 3 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
URI
Query on URI

A, B, C, H URIDINE
C9 H12 N2 O6
DRTQHJPVMGBUCF-XVFCMESISA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.75 Å
  • R-Value Free: 0.300
  • R-Value Work: 0.225
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 69.86 α = 90.00
b = 130.44 β = 115.36
c = 70.05 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-02-28
  • Released Date: 2001-08-28
  • Deposition author(s): Toro, I., Thore, S., Mayer, C., Basquin, J., Seraphin, B., Suck, D.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4