1I32

LEISHMANIA MEXICANA GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE IN COMPLEX WITH INHIBITORS

Structural Biology Knowledgebase: 1I32 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.256
  • R-Value Work: 0.205

Literature

Macromolecules
Sequence Display for 1I32

Classification: OXIDOREDUCTASE

Total Structure Weight: 237146.50

Macromolecule Entities
Molecule Chains Length Organism Details
GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A, B, C..., D, E, FA, B, C, D, E, F 360 Leishmania mexicana EC#: 1.2.1.12 IUBMB
Gene Name(s): GAPG
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NMD
Query on NMD

A, B, C, D, E, F N-NAPHTHALEN-1-YLMETHYL-2'-[3,5-DIMETHOXYBENZAMIDO]- 2'-DEOXY-ADENOSINE
C30 H30 N6 O6
OARVXDFNTLYMCJ-JVUUKAHWSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
NMD N/A in BindingDB
N/A in BindingMoad
IC50: 2000 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.256
  • R-Value Work: 0.205
  • Space Group: P 21 21 2

Unit Cell:

Length (Å) Angle (°)
a = 80.39 α = 90.00
b = 394.11 β = 90.00
c = 70.96 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-02-12
  • Released Date: 2001-10-03
  • Deposition author(s): Suresh, S., Bressi, J.C., Kennedy, K.J., Verlinde, C.L.M.J., Gelb, M.H., Hol, W.G.J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4