1HYV

HIV INTEGRASE CORE DOMAIN COMPLEXED WITH TETRAPHENYL ARSONIUM

Structural Biology Knowledgebase: 1HYV SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.263
  • R-Value Work: 0.221

Literature

Macromolecules
Sequence Display for 1HYV

Classification: TRANSFERASE

Total Structure Weight: 18949.73

Macromolecule Entities
Molecule Chains Length Organism Details
INTEGRASE A 166 Human immunodeficiency virus 1 EC#: 2.7.7.49 IUBMB
Fragment: CATALYTIC CORE DOMAIN (RESIDUES 50-212)
Mutation: C65X, C130X, F185K
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
TTA
Query on TTA

A TETRAPHENYL-ARSONIUM
C24 H20 As
PJMJFVQKDBRMIP-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
TTA N/A in BindingDB
IC50: 5000000 nM  BindingMOAD
IC50: >5000000 nM  PDBbind
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
CAF
Query on CAF
A L-PEPTIDE LINKING C5 H12 As N O3 S CYS

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.263
  • R-Value Work: 0.221
  • Space Group: P 31 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 72.01 α = 90.00
b = 72.01 β = 90.00
c = 65.60 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-01-22
  • Released Date: 2001-04-04
  • Deposition author(s): Molteni, V., Greenwald, J., Rhodes, D., Hwang, Y., Kwiatkowski, W., Bushman, F.D., Siegel, J.S., Choe, S.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4