1HJB

CRYSTAL STRUCTURE OF RUNX-1/AML1/CBFALPHA RUNT DOMAIN AND C/EBPBETA BZIP DIMERIC BOUND TO A DNA FRAGMENT FROM THE CSF-1R PROMOTER

Structural Biology Knowledgebase: 1HJB SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.313
  • R-Value Work: 0.244

Literature

Macromolecules
Sequence Display for 1HJB

Classification: TRANSCRIPTION / DNA

Total Structure Weight: 100376.42


Macromolecule Entities
Molecule Chains Length Organism Details
CCAAT/ENHANCER BINDING PROTEIN BETA A, B, D, E 87 Homo sapiens Fragment: RESIDUES 259-345
Gene Name(s): CEBPB Gene View TCF5 PP9092
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
RUNT-RELATED TRANSCRIPTION FACTOR 1 C, F 123 Mus musculus Fragment: RESIDUES 60-182
Gene Name(s): Runx1 Aml1 Cbfa2 Pebp2ab
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-(*GP*AP*AP*GP*AP*TP*TP*TP*CP*CP* AP*AP*AP*CP*TP*CP*TP*GP*TP*GP*GP*TP*TP*GP*CP*G)-3') G, I 26 Homo sapiens
DNA (5'-(*CP*CP*GP*CP*AP*AP*CP*CP*AP*CP* AP*GP*AP*GP*TP*TP*TP*GP*GP*AP*AP*AP*TP*CP*TP*T)-3') H, J 26 Homo sapiens


Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.313
  • R-Value Work: 0.244
  • Space Group: P 21 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 102.17 α = 90.00
b = 109.27 β = 90.00
c = 127.40 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-01-11
  • Released Date: 2001-03-09
  • Deposition author(s): Tahirov, T.H., Ogata, K.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4