1HDI

Pig muscle 3-PHOSPHOGLYCERATE KINASE complexed with 3-PG and MgADP.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.262
  • R-Value Work: 0.207

Literature

Macromolecules
Sequence Display for 1HDI

Classification: PHOSPHOTRANSFERASE

Total Structure Weight: 43961.74

Macromolecule Entities
Molecule Chains Length Organism Details
PHOSPHOGLYCERATE KINASE A 413 Sus scrofa EC#: 2.7.2.3 IUBMB
Gene Name(s): PGK1 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
AMP
Query on AMP

A ADENOSINE MONOPHOSPHATE
C10 H14 N5 O7 P
UDMBCSSLTHHNCD-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
3PG
Query on 3PG

A 3-PHOSPHOGLYCERIC ACID
C3 H7 O7 P
OSJPPGNTCRNQQC-UWTATZPHSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.262
  • R-Value Work: 0.207
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 50.50 α = 90.00
b = 105.20 β = 98.40
c = 35.90 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-11-16
  • Released Date: 2001-02-26
  • Deposition author(s): Szilagyi, A.N., Ghosh, M., Garman, E., Vas, M.

Revision History

  • Version 1_0: 2001-02-26

    Type: Initial release

  • Version 1_1: 2011-05-08

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance