1HC8

CRYSTAL STRUCTURE OF A CONSERVED RIBOSOMAL PROTEIN-RNA COMPLEX

Structural Biology Knowledgebase: 1HC8 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.253
  • R-Value Work: 0.217

Literature

Macromolecules
Sequence Display for 1HC8

Classification: RIBOSOME

Total Structure Weight: 55455.20


Macromolecule Entities
Molecule Chains Length Organism Details
RIBOSOMAL PROTEIN L11 A, B 76 Geobacillus stearothermophilus Fragment: C-TERMINAL DOMAIN OF RIBOSOMAL PROTEIN L11
Gene Name(s): rplK
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
58 NUCLEOTIDE RIBOSOMAL 23S RNA DOMAIN C, D 58 Escherichia coli

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
OS
Query on OS

C, D OSMIUM ION
Os
XQBKHDFIPARBOX-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
K
Query on K

C, D POTASSIUM ION
K
NPYPAHLBTDXSSS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

C, D MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
GTP
Query on GTP
C, D NON-POLYMER C10 H16 N5 O14 P3 G

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.253
  • R-Value Work: 0.217
  • Space Group: P 43 21 2

Unit Cell:

Length (Å) Angle (°)
a = 150.68 α = 90.00
b = 150.68 β = 90.00
c = 63.84 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-04-27
  • Released Date: 2002-05-23
  • Deposition author(s): Conn, G.L., Draper, D.E., Lattman, E.E., Gittis, A.G.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4