1H8H

Bovine mitochondrial F1-Atpase at 100K

Structural Biology Knowledgebase: 1H8H SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.292
  • R-Value Work: 0.236

Literature

Macromolecules
Sequence Display for 1H8H

Classification: HYDROLASE

Total Structure Weight: 354131.28

Macromolecule Entities
Molecule Chains Length Organism Details
BOVINE MITOCHONDRIAL F1-ATPASE A, B, C 510 Bos taurus EC#: 3.6.3.14 IUBMB
Mutation: S481G
Gene Name(s): ATP5A1 Gene View ATP5A2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
BOVINE MITOCHONDRIAL F1-ATPASE D, E, F 482 Bos taurus EC#: 3.6.3.14 IUBMB
Gene Name(s): ATP5B Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
BOVINE MITOCHONDRIAL F1-ATPASE G 272 Bos taurus EC#: 3.6.3.14 IUBMB
Mutation: I43V
Gene Name(s): ATP5C1 Gene View ATP5C
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Membrane Protein

Source: inferred by homology | Group: ALPHA-HELICAL

Subgroup Name: F-type ATPase

Protein Name: ATP synthase (F1c10)


Small Molecules
Ligands 5 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ATP
Query on ATP

A, B, C, F ADENOSINE-5'-TRIPHOSPHATE
C10 H16 N5 O13 P3
ZKHQWZAMYRWXGA-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ADP
Query on ADP

D ADENOSINE-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
XTWYTFMLZFPYCI-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PO4
Query on PO4

E PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

B GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, B, C, D, F MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.292
  • R-Value Work: 0.236
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 280.00 α = 90.00
b = 107.00 β = 90.00
c = 139.10 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-02-06
  • Released Date: 2001-04-15
  • Deposition author(s): Braig, K., Menz, R.I., Montgomery, M.G., Leslie, A.G.W., Walker, J.E.

Revision History

  • 2014-02-19
    Type: Source and taxonomy | Details: SOURCE
  • 2014-02-19
    Type: Other | Details: HEADER
  • 2014-02-19
    Type: Citation | Details: REMARK 1
  • 2014-02-19
    Type: Non-polymer description | Details: FORMUL
  • 2014-02-19
    Type: Version format compliance | Details: REMARK 4