1H8E

(ADP.ALF4)2(ADP.SO4) BOVINE F1-ATPASE (ALL THREE CATALYTIC SITES OCCUPIED)

Structural Biology Knowledgebase: 1H8E SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.264
  • R-Value Work: 0.201

Literature

Macromolecules
Sequence Display for 1H8E

Classification: HYDROLASE

Total Structure Weight: 375483.88

Macromolecule Entities
Molecule Chains Length Organism Details
BOVINE MITOCHONDRIAL F1-ATPASE A, B, C 510 Bos taurus EC#: 3.6.3.14 IUBMB
Mutation: S481G
Gene Name(s): ATP5A1 Gene View ATP5A2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
BOVINE MITOCHONDRIAL F1-ATPASE D, E, F 482 Bos taurus EC#: 3.6.3.14 IUBMB
Gene Name(s): ATP5B Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
BOVINE MITOCHONDRIAL F1-ATPASE G 272 Bos taurus EC#: 3.6.3.14 IUBMB
Gene Name(s): ATP5C1 Gene View ATP5C
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
BOVINE MITOCHONDRIAL F1-ATPASE H 146 Bos taurus EC#: 3.6.3.14 IUBMB
Gene Name(s): ATP5D Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
BOVINE MITOCHONDRIAL F1-ATPASE I 50 Bos taurus EC#: 3.6.3.14 IUBMB
Gene Name(s): ATP5E Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Membrane Protein

Source: inferred by homology | Group: ALPHA-HELICAL

Subgroup Name: F-type ATPase

Protein Name: ATP synthase (F1c10)


Small Molecules
Ligands 5 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ADP
Query on ADP

A, B, C, D, E, F ADENOSINE-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
XTWYTFMLZFPYCI-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ALF
Query on ALF

D, F TETRAFLUOROALUMINATE ION
Al F4
UYOMQIYKOOHAMK-UHFFFAOYSA-J
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

E SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A, B, C GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, B, C, D, E, F MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.264
  • R-Value Work: 0.201
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 267.70 α = 90.00
b = 106.20 β = 90.00
c = 138.30 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-02-02
  • Released Date: 2001-08-10
  • Deposition author(s): Menz, R.I., Walker, J.E., Leslie, A.G.W.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4