1H89

CRYSTAL STRUCTURE OF TERNARY PROTEIN-DNA COMPLEX2

Structural Biology Knowledgebase: 1H89 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.45 Å
  • R-Value Free: 0.267
  • R-Value Work: 0.229

Literature

Macromolecules
Sequence Display for 1H89

Classification: TRANSCRIPTION / DNA

Total Structure Weight: 50874.13


Macromolecule Entities
Molecule Chains Length Organism Details
CAAT/ENHANCER BINDING PROTEIN BETA A, B 64 Homo sapiens Fragment: RESIDUES 273-336
Details: BZIP DOMAIN
Gene Name(s): CEBPB Gene View TCF5 PP9092
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
MYB PROTO-ONCOGENE PROTEIN C 159 Mus musculus Fragment: RESIDUES 35-193
Mutation: K35M, R36G
Details: DNA BINDING DOMAIN
Gene Name(s): Myb
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
DNA(5'-(*GP*AP*TP*GP*TP*GP*GP*CP*GP*CP*AP* AP*TP*CP*CP*TP*TP*AP*AP*CP*GP*GP*AP*CP*TP*G)-3') D 26 synthetic
DNA(5'-(*CP*CP*AP*GP*TP*CP*CP*GP*TP*TP*AP* AP*GP*GP*AP*TP*TP*GP*CP*GP*CP*CP*AP*CP*AP*T)-3') E 26 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
K
Query on K

C POTASSIUM ION
K
NPYPAHLBTDXSSS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.45 Å
  • R-Value Free: 0.267
  • R-Value Work: 0.229
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 62.68 α = 90.00
b = 73.38 β = 90.00
c = 161.70 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-01-30
  • Released Date: 2002-01-28
  • Deposition author(s): Tahirov, T.H., Ogata, K.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4