1H6Y

THE ROLE OF CONSERVED AMINO ACIDS IN THE CLEFT OF THE C-TERMINAL FAMILY 22 CARBOHYDRATE BINDING MODULE OF CLOSTRIDIUM THERMOCELLUM XYN10B IN LIGAND BINDING

Structural Biology Knowledgebase: 1H6Y SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.228
  • R-Value Work: 0.194

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1H6Y

Classification: HYDROLASE

Total Structure Weight: 37960.13

Macromolecule Entities
Molecule Chains Length Organism Details
ENDO-1,4-BETA-XYLANASE Y A, B 170 Ruminiclostridium thermocellum EC#: 3.2.1.8 IUBMB
Fragment: XYLAN BINDING DOMAIN RESIDUE 560-720
Mutation: E138A
Gene Name(s): xynY

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CA
Query on CA

A, B CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.228
  • R-Value Work: 0.194
  • Space Group: P 61 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 89.87 α = 90.00
b = 89.87 β = 90.00
c = 209.00 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-06-29
  • Released Date: 2002-06-27
  • Deposition author(s): Xie, H., Bolam, D.N., Charnock, S.J., Davies, G.J., Williamson, M.P., Simpson, P.J., Fontes, C.M.G.A., Ferreira, L.M.A., Gilbert, H.J.

Revision History

  • 2011-11-16
    Type: Polymer description | Details: REMARK 400
  • 2011-11-16
    Type: Sequence database correspondence | Details: SEQADV,DBREF
  • 2011-11-16
    Type: Data collection | Details: REMARK 200
  • 2011-11-16
    Type: Biological assembly | Details: REMARK 300,REMARK 350
  • 2011-11-16
    Type: Other | Details: REMARK 525,REMARK 280
  • 2011-11-16
    Type: Entry title | Details: TITLE
  • 2011-11-16
    Type: Non-polymer description | Details: FORMUL
  • 2011-11-16
    Type: Geometry validation | Details: REMARK 500