1H2K

FACTOR INHIBITING HIF-1 ALPHA IN COMPLEX WITH HIF-1 ALPHA FRAGMENT PEPTIDE

Structural Biology Knowledgebase: 1H2K SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.15 Å
  • R-Value Free: 0.213
  • R-Value Work: 0.178

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1H2K

Classification: TRANSCRIPTION ACTIVATOR / INHIBITOR

Total Structure Weight: 45230.72

Macromolecule Entities
Molecule Chains Length Organism Details
FACTOR INHIBITING HIF1 A 349 Homo sapiens EC#: 1.14.11.30 IUBMB 1.14.11.n4 IUBMB
Gene Name(s): HIF1AN Gene View FIH1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
HYPOXIA-INDUCIBLE FACTOR 1 ALPHA S 41 Homo sapiens Fragment: C-TERMINAL TRANSACTIVATION DOMAIN FRAGMENT, RESIDUES 786-826
Gene Name(s): HIF1A Gene View BHLHE78 MOP1 PASD8
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
OGA
Query on OGA

A N-OXALYLGLYCINE
C4 H5 N O5
BIMZLRFONYSTPT-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FE2
Query on FE2

A FE (II) ION
Fe
CWYNVVGOOAEACU-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
OGA Ki: 1200000 nM (100) BindingDB

N/A in BindingMoad
Ki: 1200000 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.15 Å
  • R-Value Free: 0.213
  • R-Value Work: 0.178
  • Space Group: P 41 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 86.16 α = 90.00
b = 86.16 β = 90.00
c = 146.66 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-08-12
  • Released Date: 2002-11-28
  • Deposition author(s): Elkins, J.M., Hewitson, K.S., Mcneill, L.A., Schlemminger, I., Seibel, J.F., Schofield, C.J.

Revision History

  • 2011-07-13
    Type: Flag residual B-value | Details: Tagged residual B temperature factor
  • 2011-07-13
    Type: Version format compliance | Details: Compliance with PDBx exchange dictionary V4