1H15

X-ray crystal structure of HLA-DRA1*0101/DRB5*0101 complexed with a peptide from Epstein Barr Virus DNA polymerase.

Structural Biology Knowledgebase: 1H15 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.1 Å
  • R-Value Free: 0.310
  • R-Value Work: 0.256

Literature

Macromolecules
Sequence Display for 1H15

Classification: IMMUNE SYSTEM / TRANSFERASE

Total Structure Weight: 91121.46

Macromolecule Entities
Molecule Chains Length Organism Details
HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR ALPHA CHAIN A, D 182 Homo sapiens Fragment: ALPHA CHAIN, RESIDUES 26-207
Gene Name(s): HLA-DRA Gene View HLA-DRA1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR BETA 1 CHAIN B, E 190 Homo sapiens Fragment: BETA CHAIN, RESIDUES 30-219
Gene Name(s): HLA-DRB5 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
DNA POLYMERASE C, F 14 Human herpesvirus 4 EC#: 2.7.7.7 IUBMB
Fragment: RESIDUES 628-641
Gene Name(s): BALF5
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A, D N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.1 Å
  • R-Value Free: 0.310
  • R-Value Work: 0.256
  • Space Group: P 65
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 179.24 α = 90.00
b = 179.24 β = 90.00
c = 92.88 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-07-02
  • Released Date: 2002-10-03
  • Deposition author(s): Lang, H., Jacobsen, H., Ikemizu, S., Andersson, C., Harlos, K., Madsen, L., Hjorth, P., Sondergaard, L., Svejgaard, A., Wucherpfennig, K., Stuart, D.I., Bell, J.I., Jones, E.Y., Fugger, L.

Revision History

  • 2012-06-27
    Type: Other | Details: Citation
  • 2011-09-28
    Type: Refinement description | Details: REMARK 3
  • 2011-09-28
    Type: Binding sites and description | Details: REMARK 800,SITE
  • 2011-09-28
    Type: Non-polymer description | Details: HET,HETSYN,FORMUL,HETNAM
  • 2011-09-28
    Type: Biological assembly | Details: REMARK 300,REMARK 350
  • 2011-09-28
    Type: Geometry validation | Details: REMARK 500
  • 2011-09-28
    Type: Other | Details: REMARK 525
  • 2011-09-28
    Type: Atom nomenclature | Details: HETATM
  • 2011-09-28
    Type: Advisory | Details: CAVEAT
  • 2011-09-28
    Type: Linkage | Details: CONECT,LINK
  • 2011-09-28
    Type: Version format compliance | Details: REMARK 4