1GZT

Pseudomonas aeruginosa lectin II (PA-IIL) together with fucose


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.3 Å
  • R-Value Free: 0.158
  • R-Value Work: 0.136

Literature

Macromolecules
Sequence Display for 1GZT

Classification: LECTIN

Total Structure Weight: 48440.87

Macromolecule Entities
Molecule Chains Length Organism Details
FUCOSE-SPECIFIC LECTIN A, B, C, D 115 Pseudomonas aeruginosa Details: CO-CRYSTALS WITH FUCOSE
Gene Name(s): lecB PA3361
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FUC
Query on FUC

A, B, C, D ALPHA-L-FUCOSE
C6 H12 O5
SHZGCJCMOBCMKK-SXUWKVJYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A, B, C, D CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
FUC N/A in BindingDB
IC50: 250000 nM  BindingMOAD
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.3 Å
  • R-Value Free: 0.158
  • R-Value Work: 0.136
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 52.66 α = 90.00
b = 72.92 β = 94.23
c = 54.56 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-06-06
  • Released Date: 2002-11-19
  • Deposition author(s): Mitchell, E., Imberty, A., Gilboa-Garber, N.

Revision History

  • Version 1_0: 2002-11-19

    Type: Initial release

  • Version 1_1: 2011-05-08

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance