1GYC

CRYSTAL STRUCTURE DETERMINATION AT ROOM TEMPERATURE OF A LACCASE FROM TRAMETES VERSICOLOR IN ITS OXIDISED FORM CONTAINING A FULL COMPLEMENT OF COPPER IONS

Structural Biology Knowledgebase: 1GYC SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.212
  • R-Value Work: 0.159

Literature

Macromolecules
Sequence Display for 1GYC

Classification: OXIDOREDUCTASE

Total Structure Weight: 55989.85

Macromolecule Entities
Molecule Chains Length Organism Details
LACCASE 2 A 499 Trametes versicolor EC#: 1.10.3.2 IUBMB
Mutation: V5A, V31F, D49V, S56T, V259I, T343S, D460E
Gene Name(s): LCC2 LCCI
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CU
Query on CU

A COPPER (II) ION
Cu
JPVYNHNXODAKFH-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
IPA
Query on IPA

A ISOPROPYL ALCOHOL
2-PROPANOL (Synonym)
C3 H8 O
KFZMGEQAYNKOFK-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.212
  • R-Value Work: 0.159
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 83.68 α = 90.00
b = 84.98 β = 90.00
c = 91.81 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-04-23
  • Released Date: 2002-08-22
  • Deposition author(s): Choinowski, T., Antorini, M., Piontek, K.

Revision History

  • 2011-09-07
    Type: Biological assembly | Details: REMARK 300,REMARK 350
  • 2011-09-07
    Type: Geometry validation | Details: REMARK 500
  • 2011-09-07
    Type: Version format compliance | Details: REMARK 4
  • 2011-09-07
    Type: Non-polymer description | Details: HETSYN,FORMUL
  • 2011-09-07
    Type: Other | Details: REMARK 525
  • 2011-09-07
    Type: Binding sites and description | Details: REMARK 800,SITE