1GYA

N-GLYCAN AND POLYPEPTIDE NMR SOLUTION STRUCTURES OF THE ADHESION DOMAIN OF HUMAN CD2


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 120
  • Conformers Submitted: 18
  • Selection Criteria: Prostat/struct_check

Literature

Macromolecules
Sequence Display for 1GYA

Classification: ADHESION GLYCOPROTEIN

Total Structure Weight: 14012.73

Macromolecule Entities
Molecule Chains Length Organism Details
HUMAN CD2 A 105 Homo sapiens Fragment: ADHESION DOMAIN
Details: GLYCOSYLATED
Gene Name(s): CD2 Gene View SRBC
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MAN
Query on MAN

A ALPHA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-PQMKYFCFSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BMA
Query on BMA

A BETA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-RWOPYEJCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 120
  • Conformers Submitted: 18
  • Selection Criteria: PROSTAT/STRUCT_CHECK

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1995-05-26
  • Released Date: 1996-11-08
  • Deposition author(s): Wyss, D.F., Choi, J.S., Wagner, G.

Revision History

  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4