1GY8

TRYPANOSOMA BRUCEI UDP-GALACTOSE 4' EPIMERASE

Structural Biology Knowledgebase: 1GY8 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.245
  • R-Value Work: 0.216

Literature

Macromolecules
Sequence Display for 1GY8

Classification: OXIDOREDUCTASE

Total Structure Weight: 179498.23

Macromolecule Entities
Molecule Chains Length Organism Details
UDP-GALACTOSE 4-EPIMERASE A, B, C, D 397 Trypanosoma brucei EC#: 5.1.3.2 IUBMB
Gene Name(s): galE
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAD
Query on NAD

A, B, C, D NICOTINAMIDE-ADENINE-DINUCLEOTIDE
C21 H27 N7 O14 P2
BAWFJGJZGIEFAR-NNYOXOHSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
UDP
Query on UDP

A, B, C, D URIDINE-5'-DIPHOSPHATE
C9 H14 N2 O12 P2
XCCTYIAWTASOJW-XVFCMESISA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.245
  • R-Value Work: 0.216
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 102.18 α = 90.00
b = 112.53 β = 90.00
c = 160.59 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-04-21
  • Released Date: 2003-05-22
  • Deposition author(s): Shaw, M.P., Bond, C.S., Hunter, W.N.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4