1GQ2

MALIC ENZYME FROM PIGEON LIVER

Structural Biology Knowledgebase: 1GQ2 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.256
  • R-Value Work: 0.210

Literature

Macromolecules
Sequence Display for 1GQ2

Classification: OXIDOREDUCTASE

Total Structure Weight: 1016774.75

Macromolecule Entities
Molecule Chains Length Organism Details
MALIC ENZYME A, B, C..., D, E, F, G, H, I, J, K, L, M, N, O, PA, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P 555 Columba livia EC#: 1.1.1.40 IUBMB
Mutation: M38M, M86M, M108M, M146M, M177M, M202M, M239M, M248M, M325M, M327M, M343M, M374M, M407M, M577M
Details: NADP+, OXALATE, MN2+
Gene Name(s): ME1 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 5 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAP
Query on NAP

A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE (Synonym)
C21 H28 N7 O17 P3
XJLXINKUBYWONI-NNYOXOHSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
OXL
Query on OXL

A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P OXALATE ION
C2 O4
MUBZPKHOEPUJKR-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MN
Query on MN

A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P MANGANESE (II) ION
Mn
WAEMQWOKJMHJLA-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

B, C, E, F, G, H, I, J, K, L, M, N, O, P CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

C, D, F, G, H, I, J, K, L, M, N, O, P SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.256
  • R-Value Work: 0.210
  • Space Group: P 1

Unit Cell:

Length (Å) Angle (°)
a = 124.15 α = 90.05
b = 140.86 β = 87.16
c = 167.08 γ = 75.63

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-11-19
  • Released Date: 2002-05-23
  • Deposition author(s): Yang, Z., Zhang, H., Liang, T.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4