1GPD

STUDIES OF ASYMMETRY IN THE THREE-DIMENSIONAL STRUCTURE OF LOBSTER D-GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE

Structural Biology Knowledgebase: 1GPD SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Work:

Literature

Macromolecules
Sequence Display for 1GPD

Classification: OXIDOREDUCTASE

Total Structure Weight: 293100.91

Macromolecule Entities
Molecule Chains Length Organism Details
D-GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE G, R 334 Homarus americanus EC#: 1.2.1.12 IUBMB
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAD
Query on NAD

G, R NICOTINAMIDE-ADENINE-DINUCLEOTIDE
C21 H27 N7 O14 P2
BAWFJGJZGIEFAR-NNYOXOHSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PO4
Query on PO4

R PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
ACE
Query on ACE
G, R NON-POLYMER C2 H4 O --

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Observed:
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 149.00 α = 90.00
b = 139.10 β = 90.00
c = 80.70 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1975-07-01
  • Released Date: 1977-02-17
  • Deposition author(s): Moras, D., Olsen, K.W., Sabesan, M.N., Buehner, M., Ford, G.C., Rossmann, M.G.

Revision History

  • 2014-10-29
    Type: Linkage | Details: --
  • 2014-10-29
    Type: Biological assembly | Details: Remove erroneous assemblies.
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Flag nonstandard coordinate frame | Details: Tagged nonstandard coordinate frame