1GOY

HYDROLASE(ENDORIBONUCLEASE)RIBONUCLEASE BI (G SPECIFIC ENDONUCLEASE) (E.C.3.1.27.-) COMPLEXED WITH GUANOSINE-3'-PHOSPHATE (3'-GMP)

Structural Biology Knowledgebase: 1GOY SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Work: 0.184

Literature

Macromolecules
Sequence Display for 1GOY

Classification: HYDROLASE

Total Structure Weight: 26600.63

Macromolecule Entities
Molecule Chains Length Organism Details
RIBONUCLEASE A, B 116 Bacillus intermedius Mutation: D21N, N22D, N40D, S66G, G67S
Details: RIBONUCLEASE BI(G SPECIFIC ENDONUCLEASE) COMPLEXED WITH GUANOSINE-3'-PHOSPHATE (3'-GMP)
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
3GP
Query on 3GP

A GUANOSINE-3'-MONOPHOSPHATE
C10 H14 N5 O8 P
ZDPUTNZENXVHJC-UUOKFMHZSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

W SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Observed:
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 111.38 α = 90.00
b = 69.56 β = 90.00
c = 33.46 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-10-26
  • Released Date: 2001-11-29
  • Deposition author(s): Polyakov, K.M., Lebedev, A.A., Pavlovsky, A.G., Sanishvili, R.G., Dodson, G.G.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4