1GM6

3-D STRUCTURE OF A SALIVARY LIPOCALIN FROM BOAR


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.13 Å
  • R-Value Free: 0.282
  • R-Value Work: 0.254

Literature

Macromolecules
Sequence Display for 1GM6

Classification: ODORANT-BINDING PROTEIN

Total Structure Weight: 20367.14

Macromolecule Entities
Molecule Chains Length Organism Details
SALIVARY LIPOCALIN A 175 Sus scrofa Mutation: N110D
Details: N-ACETYL-GLUCOSAMINE SITE, CADMIUM ION, GLYCEROL IN THE CAVITY
Gene Name(s): SAL1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CD
Query on CD

A CADMIUM ION
Cd
WLZRMCYVCSSEQC-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.13 Å
  • R-Value Free: 0.282
  • R-Value Work: 0.254
  • Space Group: P 41 21 2

Unit Cell:

Length (Å) Angle (°)
a = 70.11 α = 90.00
b = 70.11 β = 90.00
c = 71.75 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-09-11
  • Released Date: 2002-05-30
  • Deposition author(s): Spinelli, S., Vincent, F., Pelosi, P., Tegoni, M., Cambillau, C.

Revision History

  • Version 1_0: 2002-05-30

    Type: Initial release

  • Version 1_1: 2011-09-07

    Type: Atomic model, Data collection, Database references, Derived calculations, Non-polymer description, Other, Refinement description, Structure summary, Version format compliance