1GK8

Rubisco from Chlamydomonas reinhardtii

Structural Biology Knowledgebase: 1GK8 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.4 Å
  • R-Value Free: 0.162
  • R-Value Work: 0.149

Literature

Macromolecules
Sequence Display for 1GK8

Classification: LYASE

Total Structure Weight: 279495.13

Macromolecule Entities
Molecule Chains Length Organism Details
RIBULOSE-1,5 BISPHOSPHATE CARBOXYLASE LARGE CHAIN A, C, E, G 475 Chlamydomonas reinhardtii EC#: 4.1.1.39 IUBMB
Mutation: L46P
Gene Name(s): rbcL
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1 I, K, M, O 140 Chlamydomonas reinhardtii EC#: 4.1.1.39 IUBMB
Gene Name(s): RBCS-1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CAP
Query on CAP

A, C, E, G 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE
C6 H14 O13 P2
ITHCSGCUQDMYAI-ZMIZWQJLSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

A, C, E, G, I, K, M, O 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, C, E, G MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 4 Unique
ID Chains Type Formula 2D Diagram Parent
HYP
Query on HYP
A, C, E, G L-PEPTIDE LINKING C5 H9 N O3 PRO
KCX
Query on KCX
A, C, E, G L-PEPTIDE LINKING C7 H14 N2 O4 LYS
SMC
Query on SMC
A, C, E, G L-PEPTIDE LINKING C4 H9 N O2 S CYS
MME
Query on MME
I, K, M, O L-PEPTIDE LINKING C6 H13 N O2 S MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.4 Å
  • R-Value Free: 0.162
  • R-Value Work: 0.149
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 171.38 α = 90.00
b = 142.64 β = 124.13
c = 124.72 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-08-09
  • Released Date: 2001-10-24
  • Deposition author(s): Taylor, T.C.

Revision History

  • 2015-04-15
    Type: Non-polymer description | Details: FORMUL
  • 2015-04-15
    Type: Biological assembly | Details: REMARK 350
  • 2015-04-15
    Type: Citation | Details: JRNL
  • 2015-04-15
    Type: Other | Details: REMARK 525,REMARK 280
  • 2015-04-15
    Type: Version format compliance | Details: REMARK 4