1GJC

ENGINEERING INHIBITORS HIGHLY SELECTIVE FOR THE S1 SITES OF SER190 TRYPSIN-LIKE SERINE PROTEASE DRUG TARGETS

Structural Biology Knowledgebase: 1GJC SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.73 Å
  • R-Value Free: 0.242
  • R-Value Work: 0.199

Literature

Macromolecules
Sequence Display for 1GJC

Classification: BLOOD CLOTTING hydrolase

Total Structure Weight: 31856.43

Macromolecule Entities
Molecule Chains Length Organism Details
UROKINASE-TYPE PLASMINOGEN ACTIVATOR A 23 Homo sapiens EC#: 3.4.21.73 IUBMB
Fragment: SHORT CHAIN
Gene Name(s): PLAU Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
UROKINASE-TYPE PLASMINOGEN ACTIVATOR B 253 Homo sapiens EC#: 3.4.21.73 IUBMB
Fragment: CATALYTIC DOMAIN
Mutation: N145A
Gene Name(s): PLAU Gene View

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
130
Query on 130

B 2-(2-HYDROXY-BIPHENYL)-1H-BENZOIMIDAZOLE- 5-CARBOXAMIDINE
C20 H16 N4 O
LMGQGPVCSYOMNS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CIT
Query on CIT

B CITRIC ACID
C6 H8 O7
KRKNYBCHXYNGOX-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
130 Ki: 290 - 450 nM (99) BindingDB

Ki: 8 nM  BindingMOAD
Ki: 450 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.73 Å
  • R-Value Free: 0.242
  • R-Value Work: 0.199
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 81.78 α = 90.00
b = 50.24 β = 113.60
c = 66.41 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-04-27
  • Released Date: 2002-04-27
  • Deposition author(s): Katz, B.A., Sprengeler, P.A., Luong, C., Verner, E., Spencer, J.R., Breitenbucher, J.G., Hui, H., McGee, D., Allen, D., Martelli, A., Mackman, R.L.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Atom occupancy | Details: Restore author's atom occupancy