1GEN

C-TERMINAL DOMAIN OF GELATINASE A

Structural Biology Knowledgebase: 1GEN SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.15 Å
  • R-Value Free: 0.260
  • R-Value Work: 0.188

Literature

Macromolecules
Sequence Display for 1GEN

Classification: HYDROLASE (METALLOPROTEASE)

Total Structure Weight: 24823.21

Macromolecule Entities
Molecule Chains Length Organism Details
GELATINASE A A 218 Homo sapiens EC#: 3.4.24.24 IUBMB
Fragment: C-TERMINAL DOMAIN
Gene Name(s): MMP2 Gene View CLG4A
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.15 Å
  • R-Value Free: 0.260
  • R-Value Work: 0.188
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 57.90 α = 90.00
b = 77.40 β = 90.00
c = 53.40 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1995-07-19
  • Released Date: 1996-08-17
  • Deposition author(s): Libson, A.M., Gittis, A.G., Collier, I.E., Marmer, B.L., Goldberg, G.G., Lattman, E.E.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4