1GDH

CRYSTAL STRUCTURE OF A NAD-DEPENDENT D-GLYCERATE DEHYDROGENASE AT 2.4 ANGSTROMS RESOLUTION

Structural Biology Knowledgebase: 1GDH SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Observed: 0.189

Literature

Macromolecules
Sequence Display for 1GDH

Classification: OXIDOREDUCTASE(CHOH (D)-NAD(P)+ (A))

Total Structure Weight: 70061.53

Macromolecule Entities
Molecule Chains Length Organism Details
D-GLYCERATE DEHYDROGENASE A, B 320 Hyphomicrobium methylovorum EC#: 1.1.1.29 IUBMB
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A, B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Observed: 0.189
  • Space Group: P 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 60.41 α = 102.30
b = 60.53 β = 113.73
c = 66.29 γ = 102.73

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1993-09-22
  • Released Date: 1994-01-31
  • Deposition author(s): Goldberg, J.D., Yoshida, T., Brick, P.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4