1GD1

STRUCTURE OF HOLO-GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE FROM BACILLUS STEAROTHERMOPHILUS AT 1.8 ANGSTROMS RESOLUTION

Structural Biology Knowledgebase: 1GD1 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Observed: 0.177

Literature

Macromolecules
Sequence Display for 1GD1

Classification: OXIDOREDUCTASE(ALDEHYDE(D)-NAD(A))

Total Structure Weight: 147387.66

Macromolecule Entities
Molecule Chains Length Organism Details
HOLO-D-GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE O, P, Q, R 334 Geobacillus stearothermophilus EC#: 1.2.1.12 IUBMB
Gene Name(s): gap
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAD
Query on NAD

O, P, Q, R NICOTINAMIDE-ADENINE-DINUCLEOTIDE
C21 H27 N7 O14 P2
BAWFJGJZGIEFAR-NNYOXOHSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

O, P, Q, R SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Observed: 0.177
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 82.44 α = 90.00
b = 124.10 β = 108.98
c = 82.54 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1987-06-22
  • Released Date: 1988-01-16
  • Deposition author(s): Skarzynski, T., Moody, P.C.E., Wonacott, A.J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Flag nonstandard coordinate frame | Details: Tagged nonstandard coordinate frame