1GCQ

CRYSTAL STRUCTURE OF VAV AND GRB2 SH3 DOMAINS

Structural Biology Knowledgebase: 1GCQ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.68 Å
  • R-Value Free: 0.235
  • R-Value Work: 0.201

Literature

Macromolecules
Sequence Display for 1GCQ

Classification: SIGNALING PROTEIN / SIGNALING PROTEIN

Total Structure Weight: 22145.68

Macromolecule Entities
Molecule Chains Length Organism Details
GROWTH FACTOR RECEPTOR-BOUND PROTEIN 2 A, B 61 Homo sapiens Fragment: C-TERMINAL SH3 DOMAIN
Gene Name(s): GRB2 Gene View ASH
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
VAV PROTO-ONCOGENE C 70 Mus musculus Fragment: N-TERMINAL SH3 DOMAIN
Gene Name(s): Vav1 Vav
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MRD
Query on MRD

A (4R)-2-METHYLPENTANE-2,4-DIOL
C6 H14 O2
SVTBMSDMJJWYQN-RXMQYKEDSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.68 Å
  • R-Value Free: 0.235
  • R-Value Work: 0.201
  • Space Group: C 2 2 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 48.05 α = 90.00
b = 126.82 β = 90.00
c = 83.37 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-08-08
  • Released Date: 2001-08-08
  • Deposition author(s): Nishida, M., Nagata, K., Hachimori, Y., Ogura, K., Inagaki, F.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4