HIV-1 GP120 CORE COMPLEXED WITH CD4 AND A NEUTRALIZING HUMAN ANTIBODY     DOI:10.2210/pdb1gc1/pdb

1GC1 Display Files close FASTA Sequence PDB File PDB File (Header) mmCIF File mmCIF File (Header) PDBML/XML File PDBML/XML File (Header) Download Files close FASTA Sequence PDB File (Text) PDB File (gz) mmCIF File mmCIF File (gz) PDBML/XML File PDBML/XML File (gz) Biological Assembly 1 (gz) (A+S) Biological Assembly 2 (gz) (A+S) Print this Page Share this Page close Email Delicious Stumble Google More... Link this Page

Primary Citation       Molecular Description Hide Classification: Viral Protein/receptor/immune System Structure Weight: 106803.28   Molecule: ENVELOPE PROTEIN GP120 Polymer: 1 Type: polypeptide(L) Length: 321 Chains: G Fragment: CORE Mutation: (GARS) SUBSTITUTION AT THE N TERMINUS, GLY ALA GLY SUBSTITUTIONS FOR THE V1/V2 AND V3 LOOPS Molecule: CD4 Polymer: 2 Type: polypeptide(L) Length: 185 Chains: C Fragment: D1D2, N-TERMINAL TWO DOMAIN FRAGMENT Mutation: S184N, I185T Molecule: ANTIBODY 17B Polymer: 3 Type: polypeptide(L) Length: 213 Chains: L Fragment: ANTIGEN-BINDING FRAGMENT, FAB Other Details: MONOCLONAL ANTIBODY 17B BINDS TO A CD4-INDUCED SITE ON GP120 Molecule: ANTIBODY 17B Polymer: 4 Type: polypeptide(L) Length: 229 Chains: H Fragment: ANTIGEN-BINDING FRAGMENT, FAB Other Details: MONOCLONAL ANTIBODY 17B BINDS TO A CD4-INDUCED SITE ON GP120       Source Hide Polymer: 1 Scientific Name: Human immunodeficiency virus 1 Expression System: Drosophila melanogaster   Polymer: 2 Scientific Name: Homo sapiens Common Name: Human Expression System: Cricetulus griseus   Polymer: 3 Scientific Name: Homo sapiens Common Name: Human Expression System: Mus musculus   Polymer: 4 Scientific Name: Homo sapiens Common Name: Human Expression System: Mus musculus   Polymer: 6 Scientific Name: Synthetic construct   Polymer: 7 Scientific Name: Synthetic construct         Ligand Chemical Component Hide Identifier Name Formula Interaction View Links FUC     ALPHA-L-FUCOSE C6 H12 O5 Ligand Explorer NAG     N-ACETYL-D-GLUCOSAMINE C8 H15 N O6 Ligand Explorer NDG     2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE C8 H15 N O6 Ligand Explorer       Derived Data Hide SCOP Classification v1.75 - (7 Domains) CATH Classification v3.2.0 - (7 Domains) PFAM Classification - (4 Domains) GO Terms - (52 Terms)     Reset Layout

Biological Assembly 1     More Images... View in Jmol Other Viewers close KiNG WebMol QuickPDB FirstGlance Kiosk SimpleViewer Protein Workshop Ligand Explorer Biological assembly 1 assigned by authors and generated by PISA (software) Biological assembly 2 assigned by authors and generated by PISA (software)         Deposition Summary Hide Authors:   Kwong, P.D.,   Wyatt, R.,   Robinson, J.,   Sweet, R.W.,   Sodroski, J.,   Hendrickson, W.A. Deposition:   1998-06-15 Release:   1998-07-08 Last Modified (REVDAT):   2009-02-24       Experimental Details Hide Method:   X-RAY DIFFRACTION Experimental Data:   N/A Resolution[Å]: 2.50 R-Value: 0.210 (obs.) R-Free: 0.302 Space Group: P 2 2 21 Unit Cell:   Length [Å] Angles [°] a = 71.64 α = 90.00  b = 88.13 β = 90.00  c = 196.70 γ = 90.00        Structure Links Hide Molecule of the Month Features: T-Cell Receptor