1G85

CRYSTAL STRUCTURE OF BOVINE ODORANT BINDING PROTEIN COMPLEXED WITH IS NATURAL LIGAND

Structural Biology Knowledgebase: 1G85 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.228
  • R-Value Work: 0.203

Literature

Macromolecules
Sequence Display for 1G85

Classification: SIGNALING PROTEIN

Total Structure Weight: 37425.87

Macromolecule Entities
Molecule Chains Length Organism Details
ODORANT-BINDING PROTEIN A, B 159 Bos taurus Mutation: E117G, D154N
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
3OL
Query on 3OL

A, B (3R)-oct-1-en-3-ol
C8 H16 O
VSMOENVRRABVKN-QMMMGPOBSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
3OL N/A in BindingDB
Kd: 3300 nM  BindingMOAD
Kd: 3300 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.228
  • R-Value Work: 0.203
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 55.90 α = 90.00
b = 65.50 β = 98.80
c = 42.70 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-11-16
  • Released Date: 2002-06-26
  • Deposition author(s): Vincent, F., Spinelli, S., Cambillau, C., Tegoni, M.

Revision History

  • 2014-03-05
    Type: Non-polymer description | Details: --
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4