NMR Structrure of d(CCAAAGXACTGGG), X is a 3'-phosphoglycolate, 5'-phosphate gapped lesion, 10 structures
DOI:10.2210/pdb1g5k/pdb   NDB ID: 1G5K
1G5K
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: DNA
    Structure Weight: 7750.14
    Molecule: 5'-D(*CP*CP*AP*AP*AP*G)-3'
    Polymer: 1 Type: dna Length: 6
    Chains: A
    Molecule: 5'-D(P*AP*CP*TP*GP*GP*G)-3'
    Polymer: 2 Type: dna Length: 6
    Chains: B
    Molecule: 5'-D(*CP*CP*CP*AP*GP*TP*AP*CP*TP*TP*TP*GP*G)-3'
    Polymer: 3 Type: dna Length: 13
    Chains: C
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 3
    Scientific Name: Synthetic construct   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    1GJ1   MINIMIZED AVERAGE STRUCTURE OF PDB ENTRY 1G5K 
    1N0K   MINIMIZED AVERAGE STRUCTURE OF PDB ENTRY 1N0O 
    1N0O   ensemble model OF PDB ENTRY 1N0K 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    PGA
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    PGA C2 H5 O6 P
    2-PHOSPHOGLYCOLIC ACID
    PGA:1G5K
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure:1G5K
     
 
Data in orange boxes are gathered from external resources (when available).
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  •   Deposition Summary Hide
    Authors:   Junker, H.-D.,  Hoehn, S.T.,  Bunt, R.C.,  Marathius, V.,  Chen, J.,  Turner, C.J.,  Stubbe, J.

    Deposition:   2002-10-14
    Release:   2003-01-07
    Last Modified (REVDAT):   2009-02-24
     
  •   Revision History    Hide
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    2011-07-13
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  •   Experimental Details Hide
    Method:   SOLUTION NMR
    Exp. Data:
    N/A
    NMR Ensemble
    Conformers Calculated:     10
    Conformers Submitted:     10
    Selection Criteria: minimum rmsd and nmr constraints violation
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    Method: SOLUTION NMR