1G4T

THIAMIN PHOSPHATE SYNTHASE

Structural Biology Knowledgebase: 1G4T SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.55 Å
  • R-Value Free: 0.239
  • R-Value Work: 0.213

Literature

Macromolecules
Sequence Display for 1G4T

Classification: TRANSFERASE

Total Structure Weight: 49820.71

Macromolecule Entities
Molecule Chains Length Organism Details
THIAMIN PHOSPHATE SYNTHASE A, B 227 Bacillus subtilis EC#: 2.5.1.3 IUBMB
Details: COMPLEXED WITH TRIFLUORO-THIAMIN PHOSPHATE
Gene Name(s): thiE thiC ywbK BSU38290 ipa-26d
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FTP
Query on FTP

A, B 3-(4-AMINO-2-TRIFLUOROMETHYL-PYRIMIDIN-5- YLMETHYL)-4-METHYL-5-(2-PHOSPHONATOOXY-ETHYL)- THIAZOL-3-IUM
TRIFLUORO-THIAMIN PHOSPHATE (Synonym)
C12 H13 F3 N4 O4 P S
ZIBIECXVPMYJCV-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
POP
Query on POP

A, B PYROPHOSPHATE 2-
H2 O7 P2
XPPKVPWEQAFLFU-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, B MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.55 Å
  • R-Value Free: 0.239
  • R-Value Work: 0.213
  • Space Group: P 43 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 76.79 α = 90.00
b = 76.79 β = 90.00
c = 140.33 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-10-28
  • Released Date: 2001-09-26
  • Deposition author(s): Peapus, D.H., Chiu, H.-J., Campobasso, N., Reddick, J.J., Begley, T.P., Ealick, S.E.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4