1G37

CRYSTAL STRUCTURE OF HUMAN ALPHA-THROMBIN COMPLEXED WITH BCH-10556 AND EXOSITE-DIRECTED PEPTIDE


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.248
  • R-Value Work: 0.198

Literature

Macromolecules
Sequence Display for 1G37

Classification: HYDROLASE / HYDROLASE INHIBITOR

Total Structure Weight: 34720.86

Macromolecule Entities
Molecule Chains Length Organism Details
ALPHA THROMBIN A 287 Homo sapiens EC#: 3.4.21.5 IUBMB
Gene Name(s): F2 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
THROMBIN NONAPEPTIDE INHIBITOR B 9 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
110
Query on 110

A 3-(4-AMINO-CYCLOHEXYL)-2-HYDROXY-3-[(4-OXO- 2-PHENYLMETHANESULFONYL-1,2,3,4-TETRAHYDRO- PYRROLO[1,2-A]PYRAZINE-6-CARBONYL)-AMINO]- PROPIONIC ACID BUTYL ESTER
BCH-10556 (Synonym)
C28 H38 N4 O7 S
RFAVPVOPIIHJKP-KCXKOMAXSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
110 N/A in BindingDB
N/A in BindingMoad
IC50: 0.1 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.248
  • R-Value Work: 0.198
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 71.45 α = 90.00
b = 72.03 β = 100.71
c = 73.15 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-10-23
  • Released Date: 2001-04-21
  • Deposition author(s): Bachand, B., Tarazi, M., St-Denis, Y., Edmunds, J.J., Winocour, P.D., Leblond, L., Siddiqui, M.A.

Revision History

  • 2008-04-27
    Type: Version format compliance
  • 2011-07-13
    Type: Atomic model, Database references, Derived calculations, Non-polymer description, Structure summary, Version format compliance