1FZC

CRYSTAL STRUCTURE OF FRAGMENT DOUBLE-D FROM HUMAN FIBRIN WITH TWO DIFFERENT BOUND LIGANDS

Structural Biology Knowledgebase: 1FZC SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.290
  • R-Value Work: 0.220

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1FZC

Classification: BLOOD COAGULATION

Total Structure Weight: 171335.16

Macromolecule Entities
Molecule Chains Length Organism Details
FIBRIN A, D 87 Homo sapiens Fragment: DOUBLE-D
Gene Name(s): FGA Gene View
FIBRIN B, E 328 Homo sapiens Fragment: DOUBLE-D
Gene Name(s): FGB Gene View
FIBRIN C, F 319 Homo sapiens Fragment: DOUBLE-D
Mutation: I88K
Gene Name(s): FGG Gene View PRO2061
FIBRIN G, H 4 Homo sapiens Fragment: DOUBLE-D
FIBRIN I, J 4 Homo sapiens Fragment: DOUBLE-D

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

B, E, I, J N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MAN
Query on MAN

B ALPHA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-PQMKYFCFSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

B, C, E, F CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.290
  • R-Value Work: 0.220
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 83.44 α = 90.00
b = 95.60 β = 90.19
c = 113.64 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1998-05-19
  • Released Date: 1998-10-14
  • Deposition author(s): Everse, S.J., Spraggon, G., Veerapandian, L., Riley, M., Doolittle, R.F.

Revision History

  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4