1FYR

DIMER FORMATION THROUGH DOMAIN SWAPPING IN THE CRYSTAL STRUCTURE OF THE GRB2-SH2 AC-PYVNV COMPLEX

Structural Biology Knowledgebase: 1FYR SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.270
  • R-Value Work: 0.217

Literature

Macromolecules
Sequence Display for 1FYR

Classification: HORMONE / GROWTH FACTOR

Total Structure Weight: 55522.98

Macromolecule Entities
Molecule Chains Length Organism Details
GROWTH FACTOR RECEPTOR-BOUND PROTEIN 2 A, B, C, D 114 Homo sapiens Fragment: SH2 DOMAIN
Gene Name(s): GRB2 Gene View ASH
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
HEPATOCYTE GROWTH FACTOR RECEPTOR PEPTIDE I, J, K, L 5 Homo sapiens EC#: 2.7.10.1 IUBMB
Fragment: RESIDUES 1356-1359 (RESIDUES 0-3 IN COORDINATES)
Mutation: Y0X
Details: THE SEQUENCE YVNV IS ALSO FOUND IN OTHER PROTEINS
Gene Name(s): MET Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Modified Residues 2 Unique
ID Chains Type Formula 2D Diagram Parent
ACE
Query on ACE
I, J, K, L NON-POLYMER C2 H4 O --
PTR
Query on PTR
I, J, K, L L-PEPTIDE LINKING C9 H12 N O6 P TYR

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.270
  • R-Value Work: 0.217
  • Space Group: P 43 21 2

Unit Cell:

Length (Å) Angle (°)
a = 77.61 α = 90.00
b = 77.61 β = 90.00
c = 183.47 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-10-03
  • Released Date: 2000-12-06
  • Deposition author(s): Schiering, N., Casale, E., Caccia, P., Giordano, P., Battistini, C.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4